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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10673339_10685684_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10673339 - 10685684
Intron Length:
12346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CTTTCTCTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
72.6
38.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
84.8
0.78
0.7
79.7
25.8
Minor 5ss
33.8
-1.8
3
45.5
42.6
Minor BPS
53.3
0.1
2.1
71.45
41.1

Associated Gene:

Gene:
PELI1
Ensembl Gene ID:
ENSAPLG00000009701
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036305
10672959 - 10715562
42604