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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106820064_106820157_R

Intron Information:

Intron Rank:
142614
Intron Class:
major
Intron Phase:
Intron Coordinates:
106820064 - 106820157
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TGCCTCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TGCCTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
65.7
40.2
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
77.4
0.62
0.8
71.5
33
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
54.8
0.14
1.8
64.92
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023984
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037382
106819055 - 106820713
1659