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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106820198_106820311_R

Intron Information:

Intron Rank:
142615
Intron Class:
major
Intron Phase:
Intron Coordinates:
106820198 - 106820311
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
AGTCCACTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
71.3
0.48
0.9
66
34.7
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
48.5
-0
1.9
70.61
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023984
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037382
106819055 - 106820713
1659