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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10685850_10708532_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10685850 - 10708532
Intron Length:
22683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
CGYNLAVLGHGNNEKSVPQL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.5
29.7
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
38.8
-1.3
2.9
49.9
46.4
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
PELI1
Ensembl Gene ID:
ENSAPLG00000009701
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036305
10672959 - 10715562
42604