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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106897771_106905292_R

Intron Information:

Intron Rank:
151062
Intron Class:
major
Intron Phase:
Intron Coordinates:
106897771 - 106905292
Intron Length:
7522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTATGTTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
67.2
0.39
1
59.1
46.2
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028776
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023510
106897765 - 106906277
8513