Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106905594_106906053_R

Intron Information:

Intron Rank:

151063

Intron Class:

major

Intron Phase:

Intron Coordinates:

106905594 - 106906053

Intron Length:

460

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTGAGTTGA

5'SS Class:

major

3'SS Sequence:

TCTCTTCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCTT

U12 Branch Point Sequence:

TCTCCCCTCTCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

65.2

37.3

Major BPS

34.6

-0.9

4.2

73.6

41.8

Major PPT

88.1

0.86

0.7

80.5

31.5

Minor 5ss

36.3

-1.6

2.9

45.7

43.5

Minor BPS

37.9

-0.8

3.6

70.01

46.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028776

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023510

106897765 - 106906277

8513