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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106908045_106908599_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
106908045 - 106908599
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAAGGAA
5'SS Class:
major
3'SS Sequence:
TTTTACACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTTTTACAC
Flanking Amino Acid:
LAVHKTLHTQEIQRIPEDD*
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1
65.4
34.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.4
0.73
0.8
79.2
33.7
Minor 5ss
29.6
-2.3
3.6
36.8
42.2
Minor BPS
55.8
0.16
1.7
67.66
38

Associated Gene:

Gene:
OSR1
Ensembl Gene ID:
ENSAPLG00000007971
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018496
106907421 - 106916899
9479