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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106908700_106909238_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
106908700 - 106909238
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGTTTCTGACAT
Flanking Amino Acid:
FRRQDHLRDHRYIHSKEKPF
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
83.2
0.75
0.7
77.2
31.5
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
52.4
0.15
1.8
74.71
41.6

Associated Gene:

Gene:
OSR1
Ensembl Gene ID:
ENSAPLG00000007971
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018496
106907421 - 106916899
9479
ENSAPLT00000008262
106907421 - 106916899
9479