About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_106909932_106915373_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
106909932 - 106915373
Intron Length:
5442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CCGTTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
50.5
0.09
1.6
61.91
43.6

Associated Gene:

Gene:
OSR1
Ensembl Gene ID:
ENSAPLG00000007971
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018496
106907421 - 106916899
9479
ENSAPLT00000008262
106907421 - 106916899
9479