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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107049916_107052264_R

Intron Information:

Intron Rank:
148980
Intron Class:
major
Intron Phase:
Intron Coordinates:
107049916 - 107052264
Intron Length:
2349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCTT
5'SS Class:
major
3'SS Sequence:
CTCTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CATTGTAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.9
44.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85.6
0.8
0.7
80.7
24.6
Minor 5ss
35
-1.7
3.8
55.9
48.3
Minor BPS
42.8
-0.4
2.2
61.11
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029811
107049819 - 107057443
7625