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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107049916_107056288_R

Intron Information:

Intron Rank:
148983
Intron Class:
major
Intron Phase:
Intron Coordinates:
107049916 - 107056288
Intron Length:
6373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CATTGTAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85.6
0.8
0.7
80.7
24.6
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
42.8
-0.4
2.2
61.11
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043322
107048736 - 107056576
7841