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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107052432_107056288_R

Intron Information:

Intron Rank:
148981
Intron Class:
major
Intron Phase:
Intron Coordinates:
107052432 - 107056288
Intron Length:
3857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TCTTTCCTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
85.1
0.79
0.7
80
25.5
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
53.5
0.1
2.1
71.21
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029811
107049819 - 107057443
7625