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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107056456_107057349_R

Intron Information:

Intron Rank:
148982
Intron Class:
major
Intron Phase:
Intron Coordinates:
107056456 - 107057349
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCAAACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATCTTTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70.1
0.45
0.9
67.5
37
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
50.3
-0
1.6
62.42
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027606
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029811
107049819 - 107057443
7625