Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107063717_107080368_R

Intron Information:

Intron Rank:

154721

Intron Class:

major

Intron Phase:

Intron Coordinates:

107063717 - 107080368

Intron Length:

16652

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACATCT

5'SS Class:

major

3'SS Sequence:

TCCCTTTGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCAAAA

U12 Branch Point Sequence:

AGTCTCTCAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

1.1

75.1

35.8

Major BPS

68.1

0.45

73.5

28.6

Major PPT

74.8

0.56

0.9

70.7

33.5

Minor 5ss

46.1

-0.4

2.9

66.5

44.4

Minor BPS

62.8

0.48

1.5

77.14

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030822

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041416

107063337 - 107146130

82794

ENSAPLT00000040318

107063337 - 107082488

19152

ENSAPLT00000027264

107063337 - 107147971

84635