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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107080594_107081510_R

Intron Information:

Intron Rank:
154722
Intron Class:
major
Intron Phase:
Intron Coordinates:
107080594 - 107081510
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
CTTTCTCCAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
CTTTCTCCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
66.7
0.38
1
68.6
30.8
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
48.6
-0.1
2
65.6
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030822
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041416
107063337 - 107146130
82794
ENSAPLT00000040318
107063337 - 107082488
19152
ENSAPLT00000027264
107063337 - 107147971
84635