Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10714048_10714995_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10714048 - 10714995

Intron Length:

948

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGTG

5'SS Class:

strong_major

3'SS Sequence:

TGTCCATCACAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTCCAT

U12 Branch Point Sequence:

CTGTCCATCACA

Flanking Amino Acid:

TRSAQQRGKMVENETNQLQD

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

71.6

38.4

Major BPS

62.1

0.3

1.4

72.5

43.5

Major PPT

56.6

0.15

1.1

54.7

39.6

Minor 5ss

34.2

-1.8

3.5

44.2

44.6

Minor BPS

0.09

2.1

67.91

44.5

Associated Gene:

Gene:

PELI1

Ensembl Gene ID:

ENSAPLG00000009701

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010118

10672959 - 10715562

42604

ENSAPLT00000036305

10672959 - 10715562

42604