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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107189001_107192448_R

Intron Information:

Intron Rank:
154262
Intron Class:
major
Intron Phase:
Intron Coordinates:
107189001 - 107192448
Intron Length:
3448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTCTT
5'SS Class:
major
3'SS Sequence:
TCTTTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
77.2
37.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.5
0.84
0.6
88.2
21.6
Minor 5ss
48
-0.2
2.8
67.6
37.2
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030466
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046707
107175906 - 107192944
17039