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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107251143_107252045_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107251143 - 107252045
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGTTCCCAGACA
Flanking Amino Acid:
EIVCEENYMEVSVKTDVPAV
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
81.4
0.71
0.9
72.6
42.4
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
54
0.12
2
72.29
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026809
107247258 - 107263627
16370
ENSAPLT00000008052
107247258 - 107261448
14191