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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107252118_107253166_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107252118 - 107253166
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TAGATTTTGATC
Flanking Amino Acid:
TVAWMSALPETQNVAYQLWQ
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
68.1
42.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
39
-1.2
2.8
49
46.8
Minor BPS
52.8
0.07
1.2
57.81
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026809
107247258 - 107263627
16370
ENSAPLT00000008052
107247258 - 107261448
14191