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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107253529_107254379_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107253529 - 107254379
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTAACTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TCTAACTCAACA
Flanking Amino Acid:
LIDTTVSCPLDGISFTDTTL
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.3
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
68.5
0.42
1
62.5
38.1
Minor 5ss
35
-1.7
3.2
47
42.5
Minor BPS
57
0.22
1.8
69.77
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026809
107247258 - 107263627
16370
ENSAPLT00000008052
107247258 - 107261448
14191