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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107261004_107261085_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107261004 - 107261085
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTTTTCTCAAAT
Flanking Amino Acid:
SAPRWNIAMDGCEIKSSEYV
Intron Amino Acid Position:
814

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
83.4
35
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.5
0.53
0.9
71.3
33.5
Minor 5ss
26.7
-2.7
3.7
34.1
41.4
Minor BPS
65.5
0.56
1.6
82.37
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026809
107247258 - 107263627
16370
ENSAPLT00000008052
107247258 - 107261448
14191