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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107261210_107262231_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107261210 - 107262231
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTGATATGGACC
Flanking Amino Acid:
VRTLTHQLEQVYVHCLVAVC
Intron Amino Acid Position:
856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
75
0.62
1
65.3
41.5
Major PPT
84.8
0.78
0.7
83.6
24.5
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
46.7
-0.2
1.8
59.98
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026809
107247258 - 107263627
16370