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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107262629_107263209_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
107262629 - 107263209
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
GTGTCCCCAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
65.6
0.35
1
59.3
37
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
55.6
0.17
1.9
69.65
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026809
107247258 - 107263627
16370