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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107269912_107270000_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107269912 - 107270000
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
CTCTCCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAC
U12 Branch Point Sequence:
TCTTCTCTCTCT
Flanking Amino Acid:
IACCARAAPQGSASRDLATA
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.32
1.3
49.6
47.1
Major BPS
59.7
0.24
1.3
65.3
41.6
Major PPT
80.6
0.69
0.7
77.3
24.7
Minor 5ss
33.7
-1.9
3.5
37.8
47.1
Minor BPS
38.9
-0.7
3.6
71.91
45.3

Associated Gene:

Gene:
TTC32
Ensembl Gene ID:
ENSAPLG00000007719
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008000
107268708 - 107270125
1418