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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107277587_107278627_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107277587 - 107278627
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTACTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTTTCTTTACT
Flanking Amino Acid:
IGDYFADRQKWLNAVQYYVQ
Intron Amino Acid Position:
806

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75.9
34
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
82.7
0.74
0.8
78.5
34.7
Minor 5ss
49.1
-0.1
2.4
64.8
41.7
Minor BPS
79.9
1.02
1.5
95.83
29.9

Associated Gene:

Gene:
WDR35
Ensembl Gene ID:
ENSAPLG00000007231
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007545
107276435 - 107310094
33660