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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107280622_107283148_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107280622 - 107283148
Intron Length:
2527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAAATC
5'SS Class:
major
3'SS Sequence:
GTTTTTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTTTTCACA
Flanking Amino Acid:
FIEDNPHPRLWRLLAEAALQ
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
74
34.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.1
0.63
0.9
73.2
36.4
Minor 5ss
37.5
-1.4
3.2
49.3
41.3
Minor BPS
62.5
0.39
1.7
74.03
38.5

Associated Gene:

Gene:
WDR35
Ensembl Gene ID:
ENSAPLG00000007231
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007545
107276435 - 107310094
33660