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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107285927_107287826_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107285927 - 107287826
Intron Length:
1900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
ATTTTTAGAAAA
Flanking Amino Acid:
ITASDKILLVGRESGTIQRY
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
70
0.5
1
67
39.8
Major PPT
80.4
0.68
0.8
73.5
37.1
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
48.3
-0.1
1.7
64.67
34.9

Associated Gene:

Gene:
WDR35
Ensembl Gene ID:
ENSAPLG00000007231
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007545
107276435 - 107310094
33660