About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107299418_107302323_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107299418 - 107302323
Intron Length:
2906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
ATTTATCAAAGT
Flanking Amino Acid:
YFANIRPDYKWGYCSNTVVY
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
79
0.72
1
80.3
31.7
Major PPT
82.3
0.73
0.9
80.2
31.8
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
43.4
-0.4
2.3
67.69
43.2

Associated Gene:

Gene:
WDR35
Ensembl Gene ID:
ENSAPLG00000007231
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007545
107276435 - 107310094
33660