About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107304199_107304293_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
107304199 - 107304293
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
CTTTAAAAACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ATTTCTTTAAAA
Flanking Amino Acid:
CQIMRDENDQNPILIDTGMN
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.1
59.7
39.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
57.6
0.17
1
50.3
41.8
Minor 5ss
32.8
-2
3.4
37
41.5
Minor BPS
78.2
0.88
1.2
83.16
30.4

Associated Gene:

Gene:
WDR35
Ensembl Gene ID:
ENSAPLG00000007231
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007545
107276435 - 107310094
33660