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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107309895_107310070_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107309895 - 107310070
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGCCG
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTTAACAAGG
Flanking Amino Acid:
MFIYLCKKIAVPGNVQLR
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.3
0.29
1.1
47
42.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
24.6
-2.9
3.2
30.9
42.6
Minor BPS
39.9
-0.9
2.2
49.16
44.4

Associated Gene:

Gene:
WDR35
Ensembl Gene ID:
ENSAPLG00000007231
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007545
107276435 - 107310094
33660