Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107320516_107324530_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

107320516 - 107324530

Intron Length:

4015

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAATTAA

5'SS Class:

major

3'SS Sequence:

AGCTTACAGATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTTAC

U12 Branch Point Sequence:

TCCTCTTCGAGC

Flanking Amino Acid:

KRTCSGITPFAEKDLGVIVD

Intron Amino Acid Position:

285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.1

68.3

32.2

Major BPS

57.6

0.19

1.1

49.1

37.7

Major PPT

52.7

0.06

1.1

47.8

39.3

Minor 5ss

41.4

-1

54.4

44.3

Minor BPS

47.7

-0.2

1.9

57.07

42.6

Associated Gene:

Gene:

MATN3

Ensembl Gene ID:

ENSAPLG00000006850

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007132

107319916 - 107330705

10790