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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107324668_107328080_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107324668 - 107328080
Intron Length:
3413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGTGG
5'SS Class:
major
3'SS Sequence:
ACGCCCTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAA
U12 Branch Point Sequence:
TTTTGTGTAAAC
Flanking Amino Acid:
LTSKFRETFCAANTCALGTH
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
45.3
Major BPS
57.5
0.19
1.4
61.7
43.1
Major PPT
65.5
0.35
0.8
58.7
32.2
Minor 5ss
36.6
-1.5
3.3
47.3
48.1
Minor BPS
48.5
-0.1
2.4
70.99
40.7

Associated Gene:

Gene:
MATN3
Ensembl Gene ID:
ENSAPLG00000006850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007132
107319916 - 107330705
10790