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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107328651_107330560_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107328651 - 107330560
Intron Length:
1910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCC
5'SS Class:
major
3'SS Sequence:
TCCCTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
TCCCTCCTGACA
Flanking Amino Acid:
SGFSGSHGAADSACKNRPLD
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
60.6
40.1
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
72.1
0.5
0.9
67.9
32.3
Minor 5ss
35
-1.7
3.7
51
45.8
Minor BPS
49.4
-0
1.7
60
40

Associated Gene:

Gene:
MATN3
Ensembl Gene ID:
ENSAPLG00000006850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007132
107319916 - 107330705
10790