Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107337348_107339487_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107337348 - 107339487

Intron Length:

2140

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGTGCA

5'SS Class:

major

3'SS Sequence:

TTTTTTAATGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTTTTTTAATG

Flanking Amino Acid:

GNYYASERMAENACVLFAIS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

67.7

37.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.1

0.81

0.8

82.5

32.8

Minor 5ss

31.7

-2.1

3.3

37.8

42.2

Minor BPS

71.7

0.54

1.2

69.97

38.4

Associated Gene:

Gene:

LAPTM4A

Ensembl Gene ID:

ENSAPLG00000006688

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006949

107333831 - 107345878

12048