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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107339609_107345779_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107339609 - 107345779
Intron Length:
6171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TGATCTTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TAACTCTGATCT
Flanking Amino Acid:
GTIILGTWYMVVNLLMGILL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
79
0.72
1
69
38.9
Major PPT
78.9
0.65
0.9
76.9
37
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
49.8
0.07
1.7
68.6
41.5

Associated Gene:

Gene:
LAPTM4A
Ensembl Gene ID:
ENSAPLG00000006688
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006949
107333831 - 107345878
12048