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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107406556_107409752_F

Intron Information:

Intron Rank:
142306
Intron Class:
major
Intron Phase:
Intron Coordinates:
107406556 - 107409752
Intron Length:
3197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGATAT
5'SS Class:
major
3'SS Sequence:
TTTAAACTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTCTCTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
77.7
33.3
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
72.8
0.51
0.9
63
42.8
Minor 5ss
35
-1.7
3.1
47.6
47.9
Minor BPS
75.3
0.77
1.3
79.33
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026631
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048193
107406276 - 107412164
5889