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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107455657_107457515_F

Intron Information:

Intron Rank:
126952
Intron Class:
major
Intron Phase:
Intron Coordinates:
107455657 - 107457515
Intron Length:
1859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATATAAA
5'SS Class:
major
3'SS Sequence:
TGTTTTTCATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
69.2
37
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.3
0.73
0.9
82.4
34
Minor 5ss
40
-1.1
2.6
41.4
45.4
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018404
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017709
107454743 - 107461428
6686