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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107457598_107459876_F

Intron Information:

Intron Rank:
126953
Intron Class:
major
Intron Phase:
Intron Coordinates:
107457598 - 107459876
Intron Length:
2279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAT
U12 Branch Point Sequence:
TTCTTCCTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
75.1
41.1
Major BPS
63.3
0.33
1.2
65.6
39.7
Major PPT
74.9
0.56
0.9
74.8
33.7
Minor 5ss
37.2
-1.4
3.1
49.5
46.7
Minor BPS
64.5
0.43
1.6
74.28
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018404
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017709
107454743 - 107461428
6686