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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10746151_10746989_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10746151 - 10746989
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTAAAAAAAA
Flanking Amino Acid:
LPDVCPKEPTGDPSNLCDSP
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.3
0.64
0.9
73.2
37.2
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
40.3
-0.7
2.2
55.95
42.3

Associated Gene:

Gene:
VPS54
Ensembl Gene ID:
ENSAPLG00000009734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010183
10745989 - 10784089
38101