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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10748715_10750988_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10748715 - 10750988
Intron Length:
2274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATAGTCA
5'SS Class:
major
3'SS Sequence:
TGCTTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
TFDRTLLHTHDKSRTDLEQV
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.35
1.1
57
36.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
79.5
0.66
0.8
78
35.1
Minor 5ss
42.6
-0.8
3.2
53.2
46
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
VPS54
Ensembl Gene ID:
ENSAPLG00000009734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010183
10745989 - 10784089
38101