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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107498082_107499132_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107498082 - 107499132
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTAAT
U12 Branch Point Sequence:
TCTGAGCTAGCC
Flanking Amino Acid:
DDDGFSGSGAGPLADPSLTW
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
61.6
0.29
1.3
63.6
42.5
Major PPT
89.7
0.89
0.7
85
29.8
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
37.3
-0.9
2.5
51.65
45.3

Associated Gene:

Gene:
SDC1
Ensembl Gene ID:
ENSAPLG00000010484
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010914
107496136 - 107522781
26646