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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107499215_107522721_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107499215 - 107522721
Intron Length:
23507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCCCG
5'SS Class:
major
3'SS Sequence:
TTCCTCTTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCCTCTTTAAAG
Flanking Amino Acid:
ALCLHAAALPQTTNLNLPPE
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
53.6
45.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.9
0.61
1
77.9
28.3
Minor 5ss
33.2
-1.9
3
40.9
44.9
Minor BPS
65.3
0.34
1.5
63.96
44.2

Associated Gene:

Gene:
SDC1
Ensembl Gene ID:
ENSAPLG00000010484
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010914
107496136 - 107522781
26646