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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10751024_10752299_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10751024 - 10752299
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGACAT
U12 Branch Point Sequence:
TTTTCTTTTGCT
Flanking Amino Acid:
SRTDLEQVPKIFMKPDFALE
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
46.8
-0.2
1.3
52.7
43.2
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
VPS54
Ensembl Gene ID:
ENSAPLG00000009734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010183
10745989 - 10784089
38101