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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107535673_107536620_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107535673 - 107536620
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGGT
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTCTTCTTACAG
Flanking Amino Acid:
PAQRKIIMHKIRPHITTLRK
Intron Amino Acid Position:
1020

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
71.2
38.9
Major BPS
68
0.45
1
57.8
39
Major PPT
92.6
0.96
0.6
87.8
22.4
Minor 5ss
39.8
-1.1
3.3
58.3
46.4
Minor BPS
56.3
0.06
1.8
63.72
44.3

Associated Gene:

Gene:
PUM2
Ensembl Gene ID:
ENSAPLG00000010496
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048191
107535541 - 107579958
44418
ENSAPLT00000047799
107535541 - 107579958
44418
ENSAPLT00000024396
107535541 - 107579958
44418
ENSAPLT00000011050
107535541 - 107579958
44418