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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107538204_107539196_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107538204 - 107539196
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GTCATCTTATTT
Flanking Amino Acid:
LHQHTEQLVQDQYGNYVIQH
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
1
88.3
26.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84.2
0.77
0.8
81.6
34.4
Minor 5ss
35.7
-1.6
2.6
43.1
43.8
Minor BPS
54.3
0.21
1.6
68.69
42.7

Associated Gene:

Gene:
PUM2
Ensembl Gene ID:
ENSAPLG00000010496
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011050
107535541 - 107579958
44418
ENSAPLT00000048191
107535541 - 107579958
44418
ENSAPLT00000047799
107535541 - 107579958
44418
ENSAPLT00000024396
107535541 - 107579958
44418