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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107551001_107555812_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107551001 - 107555812
Intron Length:
4812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTCTTTTTATTT
Flanking Amino Acid:
GSALGGFGSSVGSSASSSAT
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
72.7
44.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.7
0.85
0.7
85.7
28.2
Minor 5ss
34.5
-1.8
3.3
50
46.3
Minor BPS
57.7
0.32
1.6
71.36
40.7

Associated Gene:

Gene:
PUM2
Ensembl Gene ID:
ENSAPLG00000010496
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048191
107535541 - 107579958
44418
ENSAPLT00000047799
107535541 - 107579958
44418
ENSAPLT00000011050
107535541 - 107579958
44418