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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_10755448_10758831_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10755448 - 10758831
Intron Length:
3384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
CTGTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
CATATCTCAATG
Flanking Amino Acid:
QQELQGIHSFRHLGSQLCEL
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
72.7
38.8
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
80.6
0.69
0.8
80.5
31.5
Minor 5ss
35.1
-1.7
3
45.5
42.9
Minor BPS
49.6
-0.1
1.7
53.07
42

Associated Gene:

Gene:
VPS54
Ensembl Gene ID:
ENSAPLG00000009734
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010183
10745989 - 10784089
38101