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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107557300_107564647_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107557300 - 107564647
Intron Length:
7348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AATTCTTTTATT
Flanking Amino Acid:
FGQGLATGMPGYQVLAPTAY
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
69.9
0.45
1
65.5
40.7
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
65.7
0.57
1.5
79.18
37.3

Associated Gene:

Gene:
PUM2
Ensembl Gene ID:
ENSAPLG00000010496
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011050
107535541 - 107579958
44418
ENSAPLT00000048191
107535541 - 107579958
44418
ENSAPLT00000047799
107535541 - 107579958
44418
ENSAPLT00000024396
107535541 - 107579958
44418