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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107564787_107566375_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107564787 - 107566375
Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGTTCC
5'SS Class:
major
3'SS Sequence:
TGGCCTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTAAGAAAAT
Flanking Amino Acid:
ASQAQQGQQPVLRAGATQRP
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
67.3
39.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.6
0.64
0.9
72.7
37.5
Minor 5ss
40.9
-1
3
54.1
43.1
Minor BPS
41.8
-0.5
2.6
71.49
44.8

Associated Gene:

Gene:
PUM2
Ensembl Gene ID:
ENSAPLG00000010496
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048191
107535541 - 107579958
44418
ENSAPLT00000047799
107535541 - 107579958
44418
ENSAPLT00000024396
107535541 - 107579958
44418
ENSAPLT00000011050
107535541 - 107579958
44418