About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_107567812_107569338_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107567812 - 107569338
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTACTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTAGCTATAATT
Flanking Amino Acid:
ALAAAQQPHIAGVFSAGLAP
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.7
0.67
0.8
75.2
34.4
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
59.5
0.38
1.7
77.42
39.4

Associated Gene:

Gene:
PUM2
Ensembl Gene ID:
ENSAPLG00000010496
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048191
107535541 - 107579958
44418
ENSAPLT00000024396
107535541 - 107579958
44418
ENSAPLT00000011050
107535541 - 107579958
44418